rs31199542 SNP Detail

Summary

• ID
  rs31199542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146045332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTCAGC ACCCTCACCC
  TCACCCCCAC CCTGTGTTAA ACTGACTGTC AAGTTGACAG GAGCTAGAAC CAGCAATGAC
  ACTAGGCTCT GAGTATGTGA GAGGTTTTTC TAGCTTAGGT TAGGCTAATT AAAATGGGGA
  GACTTACCAT AAATGTAGAC AGCACCACTC TGTGGTCTGG GTCTCAGATT AAACGGCAGC
  Y
  TCATTTATTT GTCTCTGAGT GTGGCTGCTG CTGACTTACA ACACCGCCAT GATGGACCGT
  AGCCCCAAAC TGTACCCCCA AACCGTGAGC CGAGTTACTT ATCTATCGCT GAGATGGAAC
  ACTGGACAAA AGCAACTAAA AGGAGGAAAG CTTTATCATC TCACATCAAT GAACTGAACC
  TAGGGACTGC TCACGGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47026522	NES10845847	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31199542					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026522	NES10845847	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146045332 () rs orientation: forward

Symbol	Name	Function Class
Rr587005	regulatory region 587005	731 bp distal
Rr587006	regulatory region 587006	872 bp proximal