rs31199540 SNP Detail

Summary

• ID
  rs31199540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146045116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTGTAG TACAATTTAA
  TGAGTGTATT TCAAGTGTCT TTTCTTTGAC CTAGTCCTGG ATAGTAAACT CCCCTTATGC
  TGATAGTCTG ATAATGAAAG CATGTCACAT GTGAGTCGCA TGTGCAAGAA GAAACTTGAA
  ACGTAATTGT CTTTAGAGAT CATGGAACCT TCTGCACGTC CTTGTCCTCC TCAACCCTAC
  R
  CTAAGAGTCA TGGTTGCATC TCAGCACCCT CACCCTCACC CCCACCCTGT GTTAAACTGA
  CTGTCAAGTT GACAGGAGCT AGAACCAGCA ATGACACTAG GCTCTGAGTA TGTGAGAGGT
  TTTTCTAGCT TAGGTTAGGC TAATTAAAAT GGGGAGACTT ACCATAAATG TAGACAGCAC
  CACTCTGTGG TCTGGGTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47026520	NES10845981	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31199540					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026520	NES10845981	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146045116 () rs orientation: forward

Symbol	Name	Function Class
D3Mit259.1	DNA segment, Chr 3, Massachusetts Institute of Technology 259.1	1850 bp distal
Rr587005	regulatory region 587005	515 bp distal
Rr587006	regulatory region 587006	1088 bp proximal