rs31199535 SNP Detail

Summary

• ID
  rs31199535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146044652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTATTG GACTAGAGGC
  TGTACCGCTC ACTCGTGCAT TCCTGTGTGA GCATGCACAC ACTCAGTTCC CGGAAGTAAT
  TAAAAGTACT CGCAATGTAG AACGTATAAG GTCACGTGCT GTATGTTGTT GACACAAAAT
  TGAATGGACC ATGTCTAGGC ACACTGATAC CAGAAAGTGT CCAGCTACTC ACTCATATGA
  R
  CATATTTTAA TAGGCTAAGT AGGTCTTGGT TTTTTTTTTA AATCTTATTA TAAGGTTATT
  TGCTGACTAT TGTTGACTTC TAGTTCAAGC TACGGTCTTT AAATTCTAAC TTAATTTAAC
  TTAATGTAAT TCAAATAAGT TCTCTAGATT AAATTTGTGC TCGGGACCAC ATTGTTCTGT
  GTGTACTCAC AGTAGTAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47026514	NES10845971	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31199535					SNP	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026514	NES10845971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146044652 () rs orientation: forward

Symbol	Name	Function Class
D3Mit259	DNA segment, Chr 3, Massachusetts Institute of Technology 259	1591 bp distal
D3Mit259.1	DNA segment, Chr 3, Massachusetts Institute of Technology 259.1	1386 bp distal
Rr587005	regulatory region 587005	51 bp distal
Rr587006	regulatory region 587006	1552 bp proximal