rs31199438 SNP Detail

Summary

• ID
  rs31199438
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146084581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGATAAGG TAACTGGTCC
  CTGGACCTGC GACATGCCAG TCTCTCAGTC ATCCCAGCCC TGCAGACACA GCTTCATTTC
  AGCAGCTCAC ACTTACCTTC CAATCCTCAA AGTCTCTCCA ACCGAGATAC AGTGAGATAC
  AGCGTCGAGT AAGAGCTTGA GCAGGCGCCC AAGGGAGATT GTGGTCAGAA GTAGAAAACA
  M
  ACACCCCTGT CTCTTAAGCA CTTTGAGTTT GGGGCCTAAG CTCTAAACTC ACATTGAGGG
  GCTTGAGGAC AGAGCTCAGG GGTAGAGCAC TTGCCTGTCA CTCTCGAGGC CCTAGATTAG
  ACAGCCAGCG CTGTAAACTC ACACAAAATT CTCACTCACG GCAATGATTA ACTTGAGCAA
  GGAGGCTCTT GCTGTACAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47026952	NES10844145	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31199438					SNP	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026952	NES10844145	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146084581 () rs orientation: forward

Symbol	Name	Function Class
Gm10636	predicted gene 10636	within coordinates
Rr375875	regulatory region 375875	582 bp upstream
Rr587015	regulatory region 587015	1164 bp distal
Rr587017	regulatory region 587017	862 bp proximal
Tssr36032	transcription start site region 36032	116 bp downstream