rs31198891 SNP Detail

Summary

• ID
  rs31198891
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146050780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGCACA GCCTCCTGCT
  GGCTCCCTGG GCAATTTTGA CTTTTTTCTT ACACTTATTG ATTTGCAGAG GTGTAAAAGC
  CAGACAATTG TGGGAGGCAG CCCTCTTCTA CCACGAAGGC TCCAGGGCTG TGTATCTGCC
  TCACCAGTCC CAGCTGAGGA ATTTGAACAA TGTTATTTAA CAACTTAAAA GGTGAAACAA
  M
  GTAAATACAA TAAATCGAAG GAAGGAAAGC TTTAAAAAAA AAAAGCAACT GCAGATGTAA
  GCAGGAATTT TTAAAGCATA GAAATCTGAA AATGTAAGAT TTCAAAATGG TTGCGGGGTT
  GTTACCATAG CAACGCCAGT CTGAGCCACA GCATGTTTCC AAATGTCTTT CTCTGTGGGG
  AGATGTTCGA GGGCAGATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47026610	NES10845644	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	A	C	C	C	C		C	A	A		C
ss136043409	ENSMUSSNP3556394	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						C
ss321010018	CHEV_3_146007989	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31198891					SNP	C	C	A	C	A	C	A	C	C	C	C	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026610	NES10845644	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146050780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	260 bp proximal
Gm40167	predicted gene, 40167	1409 bp upstream
Rr587008	regulatory region 587008	986 bp distal
Rr587009	regulatory region 587009	1191 bp distal
Rr587010	regulatory region 587010	66 bp proximal
Rr587011	regulatory region 587011	372 bp proximal