rs31198884 SNP Detail

Summary

• ID
  rs31198884
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146050608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCACGCAA TATGGTGGCA
  GCAGATCACT GGGTGGACAA TGCCAGGAAT GCAGGACTTG GCGAAAGCAG TTTCCAGGCC
  TGAGTGGATT AGAACCTAAC TGACTTCCAA CTGCTTCTCG GGAACGCTTG GGTACAATGC
  AGTCACTCTT CCAGAATGTG TGCTCTCTCT CTGAGCAGCA CAGCCTCCTG CTGGCTCCCT
  S
  GGCAATTTTG ACTTTTTTCT TACACTTATT GATTTGCAGA GGTGTAAAAG CCAGACAATT
  GTGGGAGGCA GCCCTCTTCT ACCACGAAGG CTCCAGGGCT GTGTATCTGC CTCACCAGTC
  CCAGCTGAGG AATTTGAACA ATGTTATTTA ACAACTTAAA AGGTGAAACA ACGTAAATAC
  AATAAATCGA AGGAAGGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47026600	NES10845638	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31198884					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026600	NES10845638	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146050608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	432 bp proximal
Gm40167	predicted gene, 40167	1581 bp upstream
Rr587008	regulatory region 587008	814 bp distal
Rr587009	regulatory region 587009	1019 bp distal
Rr587010	regulatory region 587010	238 bp proximal
Rr587011	regulatory region 587011	544 bp proximal