rs31198399 SNP Detail

Summary

• ID
  rs31198399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146083650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTTGGGGAA ATGGTTGGTA ATGAATGAGT AGCTGCTTTA
  AGAAAGGAAG CCCTGTGGCA TCTCTGCGAT TAGGATGCTC TGGGGAGCAA TTAAGTCTCC
  Y
  GAAGATTCTG AGGTTCAACA GAAGCGGAAA CCAGCATCTT GTCCTCTGGA AGGATTGATT
  CCCAGAGAAG CAATGATCTA TAAGGGTCTC ATGTTGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45549752	mCV23541902	ABI	CRAMUS_MOUSE	f	SNP		C			T		C
ss47026942	NES10844277	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		C	C	T	T		C	T	T	C
ss136043580	ENSMUSSNP2604199	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss321010077	CHEV_3_146040859	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31198399					SNP	C	C	C	C	T	C	C	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026942	NES10844277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146083650 () rs orientation: forward

Symbol	Name	Function Class
Gm10636	predicted gene 10636	within coordinates
Rr375875	regulatory region 375875	1513 bp upstream
Rr587015	regulatory region 587015	233 bp distal
Rr587016	regulatory region 587016	1860 bp distal
Rr587017	regulatory region 587017	1793 bp proximal
Tssr36032	transcription start site region 36032	1047 bp downstream