rs31198397 SNP Detail

Summary

• ID
  rs31198397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146083523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCCCTA GTGCTTCCTC
  TCGCTATTGG CCTGCCACGT GGTCTATAAC CATTGACTCA GTGAAGTGTT AAGTCAGGAG
  AAAGCAGACA GAAAGGTGCC TCCCCCTCAT TCCATGACCC CCTCCGACAA CACCTGACTT
  CATTTAAGTT TCCAAGGAAA AAGAATATTC AAGACTCCTT GGCTGCTGCC ATGGAGGGTA
  Y
  GATTTCTTGG CTGGAAGAGA AGGCAGCGTT GGGGAAATGG TTGGTAATGA ATGAGTAGCT
  GCTTTAAGAA AGGAAGCCCT GTGGCATCTC TGCGATTAGG ATGCTCTGGG GAGCAATTAA
  GTCTCCTGAA GATTCTGAGG TTCAACAGAA GCGGAAACCA GCATCTTGTC CTCTGGAAGG
  ATTGATTCCC AGAGAAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47026940	NES10844275	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31198397					SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026940	NES10844275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146083523 () rs orientation: forward

Symbol	Name	Function Class
Gm10636	predicted gene 10636	within coordinates
Rr375875	regulatory region 375875	1640 bp upstream
Rr587015	regulatory region 587015	106 bp distal
Rr587016	regulatory region 587016	1733 bp distal
Rr587017	regulatory region 587017	1920 bp proximal
Tssr36032	transcription start site region 36032	1174 bp downstream