rs31198364 SNP Detail

Summary

• ID
  rs31198364
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146044256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGGGAT GAAGAGAGGG
  GCAAGGAGCT GGGAAGAAAG TGAAGTCCTG CATGTACATT CCTGGTCACT GGTGATTGTT
  TGACAGTGCT GCACCGCATG CACGCTGAGC ACACTCTCAC ACACACACAC ACACACACAC
  ACACACACAC ACACACCAAA TACACATGAA AACTGTGTCA ATGAAGGCAC CCTTGGGGTC
  R
  TATGAAAGGT GTGTTTTCAG GAGTAATTGG GATTGCCAAG TGAATGCTTA TTAAATGTGA
  CACCCTCTTT TGCTTGGAAG TCATGAATGA CAGATGTTTA GAATCTACTT GGGCCTTGTG
  GCATTAAGGT GGCCCTGGCT GTGGATTCAG CTTTGCCTCG TGCCTCTGTC ATCTGTAGGA
  GGCACTCGTC AGCCTCACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47026500	NES10845951	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31198364					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026500	NES10845951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146044256 () rs orientation: forward

Symbol	Name	Function Class
D3Mit259	DNA segment, Chr 3, Massachusetts Institute of Technology 259	1195 bp distal
D3Mit259.1	DNA segment, Chr 3, Massachusetts Institute of Technology 259.1	990 bp distal
Rr587005	regulatory region 587005	within coordinates
Rr587006	regulatory region 587006	1948 bp proximal