rs31197772 SNP Detail

Summary

• ID
  rs31197772
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146050571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGTGTGT GCAACAGGCA
  GTCGGGGGTC ACAGTACTGG CACGCAATAT GGTGGCAGCA GATCACTGGG TGGACAATGC
  CAGGAATGCA GGACTTGGCG AAAGCAGTTT CCAGGCCTGA GTGGATTAGA ACCTAACTGA
  CTTCCAACTG CTTCTCGGGA ACGCTTGGGT ACAATGCAGT CACTCTTCCA GAATGTGTGC
  K
  CTCTCTCTGA GCAGCACAGC CTCCTGCTGG CTCCCTGGGC AATTTTGACT TTTTTCTTAC
  ACTTATTGAT TTGCAGAGGT GTAAAAGCCA GACAATTGTG GGAGGCAGCC CTCTTCTACC
  ACGAAGGCTC CAGGGCTGTG TATCTGCCTC ACCAGTCCCA GCTGAGGAAT TTGAACAATG
  TTATTTAACA ACTTAAAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss47026598	NES10845637	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs31197772					SNP	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026598	NES10845637	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146050571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	469 bp proximal
Gm40167	predicted gene, 40167	1618 bp upstream
Rr587008	regulatory region 587008	777 bp distal
Rr587009	regulatory region 587009	982 bp distal
Rr587010	regulatory region 587010	275 bp proximal
Rr587011	regulatory region 587011	581 bp proximal