rs31197767 SNP Detail

Summary

• ID
  rs31197767
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146050314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTTTTT CCCCAGTATT
  TCCACTATAA CACTTCCACC TCTTACAGTG TCCTACATCA CACAACATCA ACAGTTGATT
  TCCCAGACCC AGAAGGACCC CTGGTCATTA GCAGAGTGGT CTTTGACAAT GTTCCTCCCA
  ACAGCGGGGA TGGGCAGCCT TCAGGGGATT CGTGCTAGAC TCGTCCTAAT TAAGTGCCGA
  M
  TGCTCTGATT CCTTTGCCCG TAGTTTCTTG TCCTCTGGGG TGAGTAATGA TGGGACACAA
  GTGTGTGCAA CAGGCAGTCG GGGGTCACAG TACTGGCACG CAATATGGTG GCAGCAGATC
  ACTGGGTGGA CAATGCCAGG AATGCAGGAC TTGGCGAAAG CAGTTTCCAG GCCTGAGTGG
  ATTAGAACCT AACTGACTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47026590	NES10845633	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31197767					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026590	NES10845633	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146050314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	726 bp proximal
Gm40167	predicted gene, 40167	1875 bp upstream
Rr587008	regulatory region 587008	520 bp distal
Rr587009	regulatory region 587009	725 bp distal
Rr587010	regulatory region 587010	532 bp proximal
Rr587011	regulatory region 587011	838 bp proximal