rs31197396 SNP Detail

Summary

• ID
  rs31197396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146082677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACTTGG ACCCTATGAT
  GAGGACATGC CTAACGTTAT ATGGTTGACG CCACCCGCAC CTGCCACGCC CCCCAGCCAG
  CCAGTCACCT GACTACCTAG TATGTACACC AAGGGACAGA AAGCCCAGGC AAAGAGCTCT
  CAACCGTCCC AGGAGCTTTG ATCCAGCATA GTCCCCGCTG CTGCCCATCA TCCATCCTTC
  Y
  ACCATCATTC CACCCTGTGA GTCTGTGGTT CTGTTCCTCT GTGACTCAGC TTGACCCCAC
  AGCCCTGCTA CTCTGCTGCT TGGCTCTGTG GGCCTCTTGC AGACCTCCCC GGGCTCCTCA
  TTATCTTATC CAACCACCTG CAGTGGCTGT AACTGCATCT GTGTCTACCT CTGCCTCTTT
  GAGCTCTTCT ATAGCCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47026926	NES10844264	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31197396					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026926	NES10844264	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146082677 () rs orientation: forward

Symbol	Name	Function Class
Gm10636	predicted gene 10636	within coordinates
Rr587014	regulatory region 587014	1175 bp distal
Rr587015	regulatory region 587015	within coordinates
Rr587016	regulatory region 587016	887 bp distal