rs31196811 SNP Detail

Summary

• ID
  rs31196811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146049698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAAGTGC AAACTCTGAT
  GTAGACGCCC CACATGGACC AACAAATGGG AGGGGAGTGT AGGGAGGCCA GGATCCAGTA
  GAGGGCAGAT GTGAGTCAGA TTCCAGAAAC AGCACATCTC TGTGGACCTA AGACTCAAAC
  TCCAATTCAA GGTAACAGTA TAAACTGCAC TCTGAAGCGA TCCTTAGGTT GAATCATACA
  Y
  ACCTAATCAT ATGTGGCTGA AGTGCACCTC ACTATGCATG TTTGTGTGCA CACATACGTA
  ATTATTCACC AAACTGCTCC AAGGCAAGCT CCTGACAGGT GAGTGTAAAA CGAGAGAGCT
  GCTTTCACAG TGTACATTCT GAGATGGGGT TTCTTTTCTA CCAGACACGC GCTCTAATGA
  AACAACCGTC ACTTACTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47026582	NES10845629	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31196811					SNP	C	C	C	C	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026582	NES10845629	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146049698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	1342 bp proximal
Rr587007	regulatory region 587007	1451 bp distal
Rr587008	regulatory region 587008	within coordinates
Rr587009	regulatory region 587009	109 bp distal
Rr587010	regulatory region 587010	1148 bp proximal
Rr587011	regulatory region 587011	1454 bp proximal