rs31196809 SNP Detail

Summary

• ID
  rs31196809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146049509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCACTTC ACCCTGGATT
  TTACATTTTC TCCGTGGGAT ACGCTTTTAT GTATTCTATC CACTACCAAA AATGAGAAGC
  CCACGAAGTC CACCACAGAA TAAAAAACTA GGATTCGCCT CCATCCCTTA TGTCCATCAT
  TCAATTCCTT TAAAGGTGGG GCTGGAGGGC AAGGCAACAG AAAGGCTGAG GCAAAGTGCA
  R
  ACTCTGATGT AGACGCCCCA CATGGACCAA CAAATGGGAG GGGAGTGTAG GGAGGCCAGG
  ATCCAGTAGA GGGCAGATGT GAGTCAGATT CCAGAAACAG CACATCTCTG TGGACCTAAG
  ACTCAAACTC CAATTCAAGG TAACAGTATA AACTGCACTC TGAAGCGATC CTTAGGTTGA
  ATCATACACA CCTAATCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47026580	NES10845628	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	A	A	A		G		G
ss136043394	ENSMUSSNP619285	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					A
ss321010011	CHEV_3_146006718	CHEVERUD	SCREENING_POP	f	SNP											G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31196809					SNP	A	A	G	A	G	A	G	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026580	NES10845628	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146049509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	1531 bp proximal
Rr587007	regulatory region 587007	1262 bp distal
Rr587008	regulatory region 587008	within coordinates
Rr587009	regulatory region 587009	59 bp proximal
Rr587010	regulatory region 587010	1337 bp proximal
Rr587011	regulatory region 587011	1643 bp proximal