rs31196807 SNP Detail

Summary

• ID
  rs31196807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146049433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAAAGT CAACCAGAAC
  TGAAGTCAAT GTATCTCAAT GAATGTCTAT GTGGTTAGAA CAGCCATTCT GAAGCTGGGG
  CACTTCACCC TGGATTTTAC ATTTTCTCCG TGGGATACGC TTTTATGTAT TCTATCCACT
  ACCAAAAATG AGAAGCCCAC GAAGTCCACC ACAGAATAAA AAACTAGGAT TCGCCTCCAT
  Y
  CCTTATGTCC ATCATTCAAT TCCTTTAAAG GTGGGGCTGG AGGGCAAGGC AACAGAAAGG
  CTGAGGCAAA GTGCAAACTC TGATGTAGAC GCCCCACATG GACCAACAAA TGGGAGGGGA
  GTGTAGGGAG GCCAGGATCC AGTAGAGGGC AGATGTGAGT CAGATTCCAG AAACAGCACA
  TCTCTGTGGA CCTAAGACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45566499	mCV24236772	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		C
ss47026578	NES10845627	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		T	C	C		T	T	T		T
ss136043391	ENSMUSSNP1080873	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
ss321010010	CHEV_3_146006642	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31196807					SNP	C	C	T	C	T	C	T	C	T	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026578	NES10845627	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146049433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	1607 bp proximal
Rr587007	regulatory region 587007	1186 bp distal
Rr587008	regulatory region 587008	26 bp proximal
Rr587009	regulatory region 587009	135 bp proximal
Rr587010	regulatory region 587010	1413 bp proximal
Rr587011	regulatory region 587011	1719 bp proximal