rs31196797 SNP Detail

Summary

• ID
  rs31196797
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38702640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAATTTGGA GATGGAGTCT TCTAGTGTTA ATTGGCGTTC
  TGAAGTTGCT TTGTGAATAT AACACGTGCA TGTGACCTTG GTTATGGTCA CCTCACAGCC
  W
  CCACACAGTT ATCTCCAGTG ATTCTCCCCA CCTGCTTAAT ATTCAGCAGA GCAATGCAAA
  CTGGTGTCCA GCTAAAACCA GGAGTCCTTG TTCCTCATA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45509062	mCV24778382	ABI	CRAMUS_MOUSE	f	SNP			T	A
ss134840440	ENSMUSSNP4029191	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31196797					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38702640 () rs orientation: forward

Symbol	Name	Function Class
Rr575691	regulatory region 575691	214 bp distal