rs31196727 SNP Detail

Summary

• ID
  rs31196727
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152056371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGTGAGC AACCAAGGGC
  TTAAAGCTGC AAACTGTAGA GAAATGTCCC TTAGTGCAGC TGGGCATGGT GTTTTCTACT
  TACCCTGTCC TTGCTCACTG TGACTGCTTC AGAAATGCTC CCTTGTGAGG AACAGGCAAG
  TTCCTGACGT GCTAGGGAAC TTAGGAGAGA AGCAAGGTGT TGAGGTACCT GGAAGCTGTA
  M
  TACAGCTATC ACTAAGATCC GAGGTAGGTT CAAAGGGTAT TGTGGCTCGG TATCAGTGGT
  GTTAGCCCAT GCTCTCATTC AGTAATCCTG GTGTGACAGA ACTGAGCTGA GAAGTGGTAA
  AAAGACACAG CTTGGCAGTA GAAGGGAAGG AGAGGGTCGA AGGGCAATGA AGTTAGGAAG
  CCTCTGCCAC TGGCTTCCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45509611	mCV25024264	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss136102650	ENSMUSSNP6031985	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss321028734	CHEV_3_152013698	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31196727					SNP	A	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152056371 () rs orientation: forward

Symbol	Name	Function Class
Rr587536	regulatory region 587536	within coordinates
Rr587537	regulatory region 587537	1190 bp proximal
Tssr32408	transcription start site region 32408	722 bp downstream
Usp33	ubiquitin specific peptidase 33	Intron