rs31196604 SNP Detail

Summary

• ID
  rs31196604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67422691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAC AGCAGCGGCC AGTGCGAGGC
  Y
  CGGCAGCAGC CAGAGGCTCA GCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45510007	mCV27557780	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss135258402	ENSMUSSNP1313107	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs31196604					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67422691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13247	CpG island 13247	within coordinates
Gm40067	predicted gene, 40067	within coordinates
Rarres1	retinoic acid receptor responder (tazarotene induced) 1	Coding-NonSynonymous
Rr577936	regulatory region 577936	155 bp proximal
Rr577937	regulatory region 577937	194 bp proximal
Rr577938	regulatory region 577938	292 bp proximal
Tssr33502	transcription start site region 33502	110 bp downstream
Tssr33503	transcription start site region 33503	129 bp downstream
Tssr33504	transcription start site region 33504	268 bp downstream
Tssr33505	transcription start site region 33505	305 bp downstream
Tssr33506	transcription start site region 33506	346 bp downstream