rs31196515 SNP Detail

Summary

• ID
  rs31196515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102181275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTTCCT CAGCCCACCA
  TCAAAGTTTG GAATCAATGA CTTGTTTTGA GTTTGCAGGC TAAAGGACTA CAGCAATCCC
  ACGAAGACAA ACCACACCTT GATCCCACTG CAGATACGGA CTTTGGCCTT TTACGTTGGT
  GATCCAGACC TTTGGGTCTG ATAGGGAGGA GTGATTGTGC TTTCCACTGT GAGAAGGACT
  Y
  GGGCTTGAGG GTCTGAGAGG AATGCTATGA TTTAAATACG GTTAGCATCC TCCAAAACTC
  CTAAGGAAAC ATTATCGGAC ACTGGTGAGA CCATCAGAGG AGTCTTGTCA TTAGGGCTGC
  GTCCTCATGA AGGGACCCGT GTGTTCTTGC AGGTGGTAGT TGGCTTGGGA GGCATGGATG
  GTTAAGAGCA GCTTGAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45509706	mCV25068811	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss135555676	ENSMUSSNP4914359	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss320855289	CHEV_3_102077882	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31196515					SNP	C	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102181275 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	1295 bp proximal
Rr582220	regulatory region 582220	1775 bp proximal