rs31194654 SNP Detail

Summary

• ID
  rs31194654
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14953520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT TAAAAGGTTG AAGCTCTTGG
  K
  AAATATTGTT TGTATTTGTC AGTGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45508925	mCV23564272	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss134618318	ENSMUSSNP361874	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320667962	CHEV_3_14888460	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31194654					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14953520 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	Intron
Cpgi12992	CpG island 12992	1246 bp distal
Rr573724	regulatory region 573724	886 bp distal
Rr573725	regulatory region 573725	1953 bp distal
Rr573726	regulatory region 573726	1270 bp distal
Rr573727	regulatory region 573727	1217 bp distal
Rr573728	regulatory region 573728	1035 bp distal
Rr573729	regulatory region 573729	178 bp proximal
Rr573730	regulatory region 573730	609 bp proximal
Tssr828	transcription start site region 828	1977 bp downstream
Tssr829	transcription start site region 829	1891 bp downstream
Tssr830	transcription start site region 830	1845 bp downstream
Tssr831	transcription start site region 831	1812 bp downstream
Tssr832	transcription start site region 832	1739 bp downstream
Tssr28466	transcription start site region 28466	1760 bp downstream
Tssr28467	transcription start site region 28467	1601 bp downstream
Tssr28468	transcription start site region 28468	1044 bp downstream