rs31194561 SNP Detail

Summary

• ID
  rs31194561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146047021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAAATGT CTGTTGGTGG
  AAACAGTTTT CTATGACCTG TCTCCCTGCC CACTGGTCAT ATAGTAAACT TTTCTCGATG
  TGAAAGAGCC ATTATGAAAA TAATGTATTG TATCCTGCTG CAGTGCAGAG AAACCTCTGA
  GAGCCGCTGG GGTTTGTAGA ACCATTTGCC TTCTTCCTAA ATGTTCCCAG ACTGCAACGC
  Y
  CCATGAACTC TTGCTTCTTT TCTCAGTTTC TCTGCCTGAT CCCTTATTAT AAGGATGCCA
  TCCGTGTCTT TCTCGCTGTT GTCTGCGTGC CTACTGAAAC AGTTCGCCTC CCTTTCCTAA
  TTAAATGCCT CTCATCTTCC CCGGACTTTA AACCAGCTCA CTATGAGAGC ACACACACAC
  ACACACACAC ACACATACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47026554	NES10845760	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T	T	C	C	C		T	T		T
ss321009998	CHEV_3_146004230	CHEVERUD	SCREENING_POP	f	SNP											T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31194561					SNP	C	T	C	T	C	T	T	C	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026554	NES10845760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146047021 () rs orientation: forward

Symbol	Name	Function Class
Rr587006	regulatory region 587006	796 bp distal
Rr587007	regulatory region 587007	729 bp proximal