rs31194557 SNP Detail

Summary

• ID
  rs31194557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146046590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCATGG GAAGAACCAG
  GTTTGCTCCT TGGAGTTGGG AAACACAGCA GCAGTCAGGA AACTTCCTCT GCTGAGGCCA
  GGACATTTTC GGCTTTACAG GTTGAGTCAG AACTGAGCCA GTGAACGACT TTATTTTTTT
  CTCATTCGGC AATTTACATT TAGAAAGGAA AAAGGGTTAT TAGCTCTCAA GCTGTATGAA
  R
  TATGAGACTG GATTTCAGCC TGCAGGCAGA CTTTCGAAGT CTCTGCACAG CGTCCCCGTA
  GACAGCCATT AGGGCTTTGC TTAAAAACCT GAAGTGGTCA GAAGCTGTCT TTCAAAGTCA
  CCAGCTCCAT CTAAGCGCAC CTTAAATTGC TAGAAAGTAC TTTTATGTTG GCTTGGAATT
  TGCCTACTTC ATCTTACTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47026548	NES10845829	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	G	A	A	A		G	G		G
ss136043358	ENSMUSSNP2621488	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss321009995	CHEV_3_146003799	CHEVERUD	SCREENING_POP	f	SNP										G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31194557					SNP	A	G	A	G	A	G	A	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026548	NES10845829	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146046590 () rs orientation: forward

Symbol	Name	Function Class
Rr587005	regulatory region 587005	1989 bp distal
Rr587006	regulatory region 587006	365 bp distal
Rr587007	regulatory region 587007	1160 bp proximal