rs31194477 SNP Detail

Summary

• ID
  rs31194477
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81818769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCTCTGATA CAGTAGATGT TAATTACATT ATTTCCATGT GTCGCAAAGT AATCTAGGAA
  TGTTTTTTCC AGAGGACACA AGAAATTGTG AATCTAGTGG CATTTTTGAG GCCAGCATTA
  CAAAAACACT TTCAAAATCA ACATGGTTCC ACATTCAGAC AAATTCTGAT GCCTCCATTC
  TATCTTGGAA CTGCTTTCAT GATACAGTAT TTGATTAATG GCTAACACTT ACTAGAATGG
  AGCCAGTCTC AGCAAGTGCT TCAAATGTGC TTTTAGGATA TGTATACTTC AAAAAAAATT
  W
  AAAAAAGTAA GAATGTGACT TACTATTTCA TTCTCACCAA TGAGGGACCT TGAGGTAAAT
  ATTAATGCAT CTTATTTATA AAATTTTGTC AATATACATT ATTATTGCTC CATTGAAAAG
  TAATGGAAAC AAAGAAGAGA TTTGAGAATA GTCACAGGTT CACAGCTCTG GCAAGTGATG
  AATGCAGACT TGAAAACCAT CACCAGCCTA TTGACTATGA AACCCATATT TTTATCCCTT
  AAGCCATTCA AGATTCTTGT CTCAAGATAG AACAACATCG ATGAAAATTC CCTAAGGACA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45509317	mCV23520375	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31194477					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81818769 () rs orientation: forward

Symbol	Name	Function Class
Gm9989	predicted gene 9989	within coordinates
Rr375244	regulatory region 375244	629 bp downstream
Rr578719	regulatory region 578719	379 bp distal