rs31193880 SNP Detail

Summary

• ID
  rs31193880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33972678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCTACC CCAGCTTTCT
  GGCTCTCTGT ACAGACACCA TCAGGTGCAC AGCAAAATCC AGGTAGTATA TAGGTTCTCA
  ACTGGGATGC AAAGTTAGTG CCTGACTACT GACCCAGTGA CTAGTCCAGG TGCCACCAGG
  CACTCAAAGA TAGGAGGTCC AGGCAGGAGA TGTCGCACAG TTGGTAGAGT GGTTGCCTAA
  Y
  GTGTACAGAG AACCCCGGGC TGCTTAAGGC AGGTGAGATG GTGTACTTCT AAAGTCTCAC
  CACTTGGAAG GTAGAGGCAG AGGAGCAAAG GTCATCCTTA GCGACAGTGA GTTTGATGTT
  AGCCTAGACT ACATGAGACC CAATTCCAAA AAAAAAAAAA AAAAATACTA TGTCTTTTTA
  AACTTAAGAT TTCATAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45509491	mCV24295681	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss134760323	ENSMUSSNP2853384	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31193880					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33972678 () rs orientation: forward

Symbol	Name	Function Class
Rr575083	regulatory region 575083	21 bp distal
Rr575084	regulatory region 575084	310 bp proximal
Rr575085	regulatory region 575085	426 bp proximal