rs31193713 SNP Detail

Summary

• ID
  rs31193713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146046386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCATAGAG TCATCTTTCT
  CCCCTCTAGT GGGCGAAGTC TGAATATATA AACCAGAAAC CAGGAAGGAA GGAAGAAAAT
  GACCTATCTC CAAATGTTCA CCCGACACTG AGTCCGGGTT CATTTCCAGA GGCAGCCAGT
  CTCATTAGGA ACCATGTTTT CTGGCCGCTG TGAGGCAGTT TCCACAGGGA CTCATTTTGG
  Y
  AAGGGCCTCA TGGGAAGAAC CAGGTTTGCT CCTTGGAGTT GGGAAACACA GCAGCAGTCA
  GGAAACTTCC TCTGCTGAGG CCAGGACATT TTCGGCTTTA CAGGTTGAGT CAGAACTGAG
  CCAGTGAACG ACTTTATTTT TTTCTCATTC GGCAATTTAC ATTTAGAAAG GAAAAAGGGT
  TATTAGCTCT CAAGCTGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss47026544	NES10845827	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T	T	T	T		C		C
ss136043349	ENSMUSSNP2107318	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss321009992	CHEV_3_146003595	CHEVERUD	SCREENING_POP	f	SNP											C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs31193713					SNP	T	T	C	T	C	T	T	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026544	NES10845827	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146046386 () rs orientation: forward

Symbol	Name	Function Class
Rr587005	regulatory region 587005	1785 bp distal
Rr587006	regulatory region 587006	161 bp distal
Rr587007	regulatory region 587007	1364 bp proximal