rs31193712 SNP Detail

Summary

• ID
  rs31193712
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146046241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGACCCTG CCTCGTCCAT
  ATCTCCCTGT GCGCCATGTG AAAACAGTCT AGAGCCCCAG GATCTTATTA TGGGACACCT
  TGGGAATGTC CTAGTGATGA GGATATAAGT CAAATATGCC CTGTTCCTGT GCTCTGTTTG
  GTAAAGATCA TAGAGTCATC TTTCTCCCCT CTAGTGGGCG AAGTCTGAAT ATATAAACCA
  S
  AAACCAGGAA GGAAGGAAGA AAATGACCTA TCTCCAAATG TTCACCCGAC ACTGAGTCCG
  GGTTCATTTC CAGAGGCAGC CAGTCTCATT AGGAACCATG TTTTCTGGCC GCTGTGAGGC
  AGTTTCCACA GGGACTCATT TTGGTAAGGG CCTCATGGGA AGAACCAGGT TTGCTCCTTG
  GAGTTGGGAA ACACAGCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47026542	NES10845826	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C	G	C	G	G	G		C	C		C
ss136043343	ENSMUSSNP4742796	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					G
ss321009990	CHEV_3_146003450	CHEVERUD	SCREENING_POP	f	SNP										C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31193712					SNP	G	C	G	C	G	C	G	G	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026542	NES10845826	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146046241 () rs orientation: forward

Symbol	Name	Function Class
Rr587005	regulatory region 587005	1640 bp distal
Rr587006	regulatory region 587006	16 bp distal
Rr587007	regulatory region 587007	1509 bp proximal