rs31192865 SNP Detail

Summary

• ID
  rs31192865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146051982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTAGCAG CACAGCCACT
  GCGGGTGAAA CAATTTAAAA GTTCGAGGGA AGCAAAGCAT TTGGTGTTAT GAGAGCAGAG
  ATTTGGGGAG TAGCCTTCTT TGTGGCATTT CCAATTTCTG TTGTCATTAC TCTTACATGG
  CTGCTGCACC AGCAGTCTCT CAGATCCGGA GGCAGGGTAG CCTCACCCGT CTTAATAACA
  Y
  TGATTGGCAC AGCAACACAG GAGAGTGTTG GATAAGTGAA AAGGGAATGG GAGAAGGAGG
  GGGGATGGCT GGCAGGTGGG TGGGGGTAGG GCTAGTTTGA TGGATGGATG CTTAGATGGA
  TGGAGGGAGG GAGGGATTAT TGAATGGATA AATGGATGGA TGGATGGATG GACGGATGGA
  TGGATGGTTG TTTGCATAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47026626	NES10845658	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T	T	T		C	C	C		T
ss136043421	ENSMUSSNP6263692	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss321010022	CHEV_3_146009191	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31192865					SNP	T	T	C	T	C	T	C	T	T	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026626	NES10845658	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146051982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	713 bp distal
Gm40167	predicted gene, 40167	207 bp upstream
Rr587010	regulatory region 587010	within coordinates
Rr587011	regulatory region 587011	809 bp distal