rs31192864 SNP Detail

Summary

• ID
  rs31192864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146051752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTCAGAT CTCTTTATTT
  TTAGCTAGAG AGAAGCATGG GATGAGGGGT GGGGCTATTC AATTTGCACA GTTTGTGCTT
  CACACTACAG AACTGTTCCC CATTTCCTTT GTGAATTGTT TATTATTTGT GGCTTTTGGT
  GTGTGTAAAC ATTTTGAAAA GCCTACTTAG TATTATAACA ATTTAATACT TTTTATATGG
  Y
  TGCTGTCACA ACACAGATTT AGGCCATGGA GTCTAGCAGC ACAGCCACTG CGGGTGAAAC
  AATTTAAAAG TTCGAGGGAA GCAAAGCATT TGGTGTTATG AGAGCAGAGA TTTGGGGAGT
  AGCCTTCTTT GTGGCATTTC CAATTTCTGT TGTCATTACT CTTACATGGC TGCTGCACCA
  GCAGTCTCTC AGATCCGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47026624	NES10845657	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31192864					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026624	NES10845657	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146051752 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	483 bp distal
Gm40167	predicted gene, 40167	437 bp upstream
Rr587008	regulatory region 587008	1958 bp distal
Rr587010	regulatory region 587010	within coordinates
Rr587011	regulatory region 587011	579 bp distal