rs31192842 SNP Detail

Summary

• ID
  rs31192842
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146046032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTCCCA CACATATAAA
  CAGACAGCAA AAACAAGAGG AATATATATT CAAATACACA CACACACACA CACACACACA
  CACACACACA CACACACACA TGAACACTTT GATTTTCCTA CTGTTATTTT ATTTTATTTT
  ACTTTATTTT ATTTTTTGAG TAAAATGTAC CTAATGGCCC CTGAGCTTTG CACTCACTGA
  K
  AAGAAACCAC AGACCCTGCC TCGTCCATAT CTCCCTGTGC GCCATGTGAA AACAGTCTAG
  AGCCCCAGGA TCTTATTATG GGACACCTTG GGAATGTCCT AGTGATGAGG ATATAAGTCA
  AATATGCCCT GTTCCTGTGC TCTGTTTGGT AAAGATCATA GAGTCATCTT TCTCCCCTCT
  AGTGGGCGAA GTCTGAATAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47026532	NES10845821	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T		G	T		T
ss136043328	ENSMUSSNP1189567	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				T
ss321009985	CHEV_3_146003241	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31192842					SNP	T	G	T	T	T	T	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026532	NES10845821	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146046032 () rs orientation: forward

Symbol	Name	Function Class
Rr587005	regulatory region 587005	1431 bp distal
Rr587006	regulatory region 587006	172 bp proximal
Rr587007	regulatory region 587007	1718 bp proximal