rs31192840 SNP Detail

Summary

• ID
  rs31192840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146045816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGGTTT ATCACAGCAT
  CTAGAGAAGT AGCTAATGAC CTCTGTTTGT TTCTTCTCAT GGGGACTCTG GGGTCACAGG
  GACATCACTG AAACTGTAAA CACACTTCTG ACTGTGAAAA CCCAGCTGTT TCTTCTTGGA
  CCCAGCATGC CATTAGCCTA AAGCCTCTTA ATTTCTCAGC AAAGGTAGAC CAGATGGCAA
  Y
  GGTATTTCTC TAAGAATTTC TCCCACACAT ATAAACAGAC AGCAAAAACA AGAGGAATAT
  ATATTCAAAT ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACATGAAC
  ACTTTGATTT TCCTACTGTT ATTTTATTTT ATTTTACTTT ATTTTATTTT TTGAGTAAAA
  TGTACCTAAT GGCCCCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47026530	NES10845820	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	T	T	T		T	C		C
ss136043322	ENSMUSSNP7236779	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss321009983	CHEV_3_146003025	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31192840					SNP	T	C	T	C	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026530	NES10845820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146045816 () rs orientation: forward

Symbol	Name	Function Class
Rr587005	regulatory region 587005	1215 bp distal
Rr587006	regulatory region 587006	388 bp proximal
Rr587007	regulatory region 587007	1934 bp proximal