rs31192684 SNP Detail

Summary

• ID
  rs31192684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27257286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTGCCT CCTGGGGATC
  CTTCCCCTGC ACCCAATCCT TCCTCTTCTG CTCCCATGTC ACATGATGCT ATCACATCTT
  GTTTTTCTTA AGAGCTCCTC CTCATAGCTT ATGGTCTGCC CTCTTCCTAC TTTTATGACC
  TACAGACAGA CAGACAGACA GACACAGAGA TACACACTTT TATACTTCTA ACCAGTTTCT
  R
  CAGATGTTAC TATTTTTTAA AAATTTGGTG CTGGGGATGG AACCCAGGAA CTTGCCCATG
  CTAGACAAAC ACTCTATCAT TGAGCTATAT CCCCAGCCCA TGTTAGTAAT GGGTAATTAG
  AATTCTCTTG TATGCACGTA CCATCTTTTC TTCATCCAGT TATCTGTTGG TGGACCTCCA
  AGCTGGTTCC ATTTACTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45507659	mCV24690011	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs31192684					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27257286 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			1065 bp distal
Rr574366	regulatory region 574366			1977 bp proximal