rs31192669 SNP Detail

Summary

• ID
  rs31192669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41355875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA CACCTGGTAA GTGACAGAGC
  Y
  GACTTCACAG CAATGGCGTA AACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45006117	mCV25115320	ABI	CRAMUS_MOUSE	f	SNP	C	T					C	T
ss50825201	NES13542366	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	C	T		T	T		T	C		T
ss146402200	ENSMUSSNP1140545	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T						T
ss325809411	CHEV_19_41441926	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31192669					SNP	C	T	T	T	C	T	C	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50825201	NES13542366	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41355875 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr405959	regulatory region 405959	25 bp upstream
Rr547615	regulatory region 547615	1563 bp distal
Rr547616	regulatory region 547616	415 bp distal
Rr547617	regulatory region 547617	within coordinates
Rr547618	regulatory region 547618	870 bp proximal