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rs31192669 SNP Detail
Summary
  • ID
    rs31192669
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:41355875 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GGCCA CACCTGGTAA GTGACAGAGC
    Y
    GACTTCACAG CAATGGCGTA AACCA                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
DBA/2J
KK/HlJ
LG/J
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
ss45006117 mCV25115320 ABI CRAMUS_MOUSE f SNP C T C T
ss50825201 NES13542366 PERLEGEN MM_PANEL2 f SNP T T T C T T T T C T
ss146402200 ENSMUSSNP1140545 ENSEMBL ENSEMBL_Sanger f SNP C T T
ss325809411 CHEV_19_41441926 CHEVERUD SCREENING_POP f SNP T T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
DBA/2J
KK/HlJ
LG/J
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
rs31192669 SNP C T T T C T C T T T T C T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss50825201 NES13542366 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:41355875 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pik3ap1 phosphoinositide-3-kinase adaptor protein 1 Intron
Rr405959 regulatory region 405959 25 bp upstream
Rr547615 regulatory region 547615 1563 bp distal
Rr547616 regulatory region 547616 415 bp distal
Rr547617 regulatory region 547617 within coordinates
Rr547618 regulatory region 547618 870 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory