GGCCA CACCTGGTAA GTGACAGAGC Y GACTTCACAG CAATGGCGTA AACCA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45006117 | mCV25115320 | ABI | CRAMUS_MOUSE | f | SNP | C | T | C | T | ||||||||||
ss50825201 | NES13542366 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | C | T | T | T | T | C | T | ||||
ss146402200 | ENSMUSSNP1140545 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | T | T | |||||||||||
ss325809411 | CHEV_19_41441926 | CHEVERUD | SCREENING_POP | f | SNP | T | T | ||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs31192669 | SNP | C | T | T | T | C | T | C | T | T | T | T | C | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50825201 | NES13542366 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr19:41355875 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Pik3ap1 | phosphoinositide-3-kinase adaptor protein 1 | Intron | ||||||
Rr405959 | regulatory region 405959 | 25 bp upstream | ||||||
Rr547615 | regulatory region 547615 | 1563 bp distal | ||||||
Rr547616 | regulatory region 547616 | 415 bp distal | ||||||
Rr547617 | regulatory region 547617 | within coordinates | ||||||
Rr547618 | regulatory region 547618 | 870 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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