rs31192539 SNP Detail

Summary

• ID
  rs31192539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154683799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGCTGTTA GCTTCTGGTG TCCACACTCT CACCTGTGCA
  GACTAGTCTT GGCGGGATCC AGGAACCAAG ATGGATCCCT CAGGTGCTCT GGCAAAGCCC
  Y
  CCCGGGCAGG GCGGACACCT CTCCTCTTCC AGGGAAGGTG CCCGTATGTC TGGAGCCCGA
  AACGGGGTCT GCCACAGAAG TTCTCTGGCT CTGGCCTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45508613	mCV24827189	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31192539					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154683799 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit219	DNA segment, Chr 3, Massachusetts Institute of Technology 219			1260 bp proximal
Rr587912	regulatory region 587912			1057 bp proximal
Tnni3k	TNNI3 interacting kinase			Intron
				Noncoding-Transcript-Variant