rs31192216 SNP Detail

Summary

• ID
  rs31192216
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3371186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG TTTTGTTTTG TTTTGTTTTG
  K
  TTTGGTTTGG TTTGGTTTGG TTTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45005647	mCV23102649	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss146001610	ENSMUSSNP1434776	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31192216					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3371186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10363	CpG island 10363	1298 bp proximal
Cpgi10364	CpG island 10364	1698 bp proximal
Cpt1a	carnitine palmitoyltransferase 1a, liver	1148 bp upstream
Gm58963	predicted gene, 58963	955 bp downstream
Rr542375	regulatory region 542375	60 bp distal
Rr542376	regulatory region 542376	154 bp distal
Rr542377	regulatory region 542377	108 bp proximal
Rr542378	regulatory region 542378	1077 bp proximal
Rr542379	regulatory region 542379	1574 bp proximal
Tssr154175	transcription start site region 154175	1106 bp upstream