rs31192184 SNP Detail

Summary

• ID
  rs31192184
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:110049675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG AGGCTCAGGA TGCAACAGCC
  W
  GCGACCCGGT GCTGGGCGCA AGCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45506478	mCV22910357	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss135590373	ENSMUSSNP4175676	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31192184					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110049675 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13719	CpG island 13719			within coordinates
Ntng1	netrin G1			Intron
				Noncoding-Transcript-Variant
Rr583463	regulatory region 583463			within coordinates
Rr583464	regulatory region 583464			510 bp distal
Rr583465	regulatory region 583465			315 bp distal
Rr583466	regulatory region 583466			574 bp proximal
Rr583467	regulatory region 583467			635 bp proximal
Rr583468	regulatory region 583468			1642 bp proximal
Tssr1022	transcription start site region 1022			1047 bp upstream
Tssr35233	transcription start site region 35233			385 bp downstream
Tssr35234	transcription start site region 35234			637 bp downstream
Tssr35235	transcription start site region 35235			1154 bp downstream
Tssr35236	transcription start site region 35236			1203 bp downstream
Tssr35237	transcription start site region 35237			1321 bp downstream
Tssr35238	transcription start site region 35238			1339 bp downstream
Tssr35239	transcription start site region 35239			1427 bp downstream
Tssr35240	transcription start site region 35240			1578 bp downstream