rs31191201 SNP Detail

Summary

• ID
  rs31191201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146049151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTAATGA AAACCAGAGT
  GGTTATCACC TTTCAGGTCC ACCCCTATTG ACCAACTTCC TACAAATTCC ATAGTGTCAA
  AGGTTCTGGA AATAGCTACA GTAGCTGAGT TCAAGCATGT GAGCGGGTAG GGGACATTTG
  AGACTCCATA ATAACTGAGG GGCTGCTCCT TCCTTAAATA AACTGGTTCT GAGGAATATG
  Y
  TCAGTGCCAC AGCTTTGCTT TAAATCTCCT TGATTATTTA CCTTCATTAC AAAAATAACT
  TGTCAATAAA ATAAACATGA TACACCAAAG TCAACCAGAA CTGAAGTCAA TGTATCTCAA
  TGAATGTCTA TGTGGTTAGA ACAGCCATTC TGAAGCTGGG GCACTTCACC CTGGATTTTA
  CATTTTCTCC GTGGGATACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45506884	mCV24236777	ABI	CRAMUS_MOUSE	f	SNP	C		T					C		C
ss47026568	NES10845622	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		T	C	C	C		C	T	C		T
ss136043385	ENSMUSSNP4517889	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321010008	CHEV_3_146006360	CHEVERUD	SCREENING_POP	f	SNP													T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31191201					SNP	C	C	T	C	T	C	T	C	T	C	C	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026568	NES10845622	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146049151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	1889 bp proximal
Rr587007	regulatory region 587007	904 bp distal
Rr587008	regulatory region 587008	308 bp proximal
Rr587009	regulatory region 587009	417 bp proximal
Rr587010	regulatory region 587010	1695 bp proximal