rs31191196 SNP Detail

Summary

• ID
  rs31191196
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130125443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTG GGTCCTTTGT TTTAAGGTCT
  K
  AGAACTATTC ATTCTCTATT AGCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45506876	mCV23442411	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G	T
ss135893660	ENSMUSSNP6533885	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		T
ss320964636	CHEV_3_130034712	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31191196					SNP	T	T	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130125443 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585157	regulatory region 585157	1387 bp distal
Rr585158	regulatory region 585158	936 bp distal