rs31189089 SNP Detail

Summary

• ID
  rs31189089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78500596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTCAGAA ATCTACTGAA
  TGACGATTGT GCTCTACAAC CTTAATGACA AGTGACTTGA GAACCCCTCA TCAATGAACA
  TAAACACACT AAAAACTAGA ATATAAAAGA ATTTTTCCAC AGAATAAACT ATGTCCTTTA
  AATTATCCAA GAATATTGAA TGATTTTTCC ACAAGGAATA AGTCCTTTCT CAGAAAAAGA
  Y
  TATTATTTTT ACGTACCAAA AAGATAATAC TTAAAAGCTG GCTGTGGGTC ATATATCTTG
  GAAGAGAACC TGCAAGTGCC ACTTTACTAA ACTACCATAA TCCCTAACTA TTTTCTAAAT
  ATTTGTCTTT ATAACCACAA ATAAGTGTAG TCCTCAGCCC TGATCAAAAC ATAAGTCTCT
  TGGCAACAGA CCAAAACCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss47026121	NES10759914	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	C		T	C		T
ss135359145	ENSMUSSNP4520788	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				T
ss320807522	CHEV_3_78397211	CHEVERUD	SCREENING_POP	f	SNP									T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs31189089					SNP	C	C	T	C	C	T	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026121	NES10759914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78500596 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	1228 bp proximal
Rr578424	regulatory region 578424	1647 bp proximal
Tssr33603	transcription start site region 33603	1050 bp downstream
Tssr33604	transcription start site region 33604	1120 bp downstream
Tssr33605	transcription start site region 33605	1133 bp downstream
Tssr33606	transcription start site region 33606	1148 bp downstream
Tssr33607	transcription start site region 33607	1224 bp downstream
Tssr33608	transcription start site region 33608	1282 bp downstream