rs31187350 SNP Detail

Summary

• ID
  rs31187350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78502522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCACCTG TGGTTGATGT
  TAGTGCTTCA GGAAGGAAGG AGGGAAAAAA AAGGCAATCG GAGGCCAGAG ATCACAGGGT
  CTATGCAGCC TCCAGCTGGG CCTCTTAAAG AGTGTTGACA ACTTCACTGC ACACCTCCCT
  GGAGGGCTCT CTCACTCCCG GTTATAATTT GTCACATCTT CACAGAATGC AACCCTACTT
  Y
  GCTTACCTCA CTTTGGCCAT ATTTGAAAAC CAGAGAGACC AACAGCGACT TTTCTGGCGC
  AGTCTTCTTT TCCTTCCATT TTTCCAACAT AAAAGCAGCG GCTGAGAACA GGGCAGAGAT
  AGTGACTTCA GCAGCTCAGA GCCCATTTAC TTCTGTTAGG AGCAGGGGCT TTTGACAGGA
  AAAGAACATT TTGTTCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47026153	NES10759775	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31187350					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026153	NES10759775	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78502522 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	269 bp upstream
Rr578423	regulatory region 578423	280 bp distal
Rr578424	regulatory region 578424	within coordinates
Tssr33603	transcription start site region 33603	850 bp upstream
Tssr33604	transcription start site region 33604	796 bp upstream
Tssr33605	transcription start site region 33605	781 bp upstream
Tssr33606	transcription start site region 33606	766 bp upstream
Tssr33607	transcription start site region 33607	693 bp upstream
Tssr33608	transcription start site region 33608	598 bp upstream