rs31186542 SNP Detail

Summary

• ID
  rs31186542
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104195313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTAATC AGTAAAGTTT
  TACTGAAACA CAACCACACT TTCTTGTGGC TTCTTTGGCA CTACCACTTT GAGAGAGTTG
  AATCATTAAA ACAAAGACCA TACATACAGC CTGCAAACAA TAAAATATTT ACTTTTGGGC
  TCACTACAAA ACAGCTTTGT TAAATGCTGA CCTAGAATTC TCAGGTTCTT GCCCTGTCCC
  M
  TCTGGGTTTC TCCTGAAGAG GCAGCAGAAA CTGTAGAAAT TCTACATCTG TATATTCCAC
  TACATTTCTC CTAGTGAACA AGAGGAATGT TTGTACAAGA TACAAACCAC TCTTAATTAT
  CTAACAAAAA GCAGGCTGGG TTTCCTCTCT ACCAGGCAAA CCACTGGAAT TTGCAATGCA
  AATAAATCTT GGGGTTTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45507593	mCV24645012	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss135566947	ENSMUSSNP3499858	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320860092	CHEV_3_104091920	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31186542					SNP	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104195313 () rs orientation: forward

Symbol	Name	Function Class
Rr582481	regulatory region 582481	94 bp proximal
Rr582482	regulatory region 582482	1075 bp proximal