rs31186342 SNP Detail

Summary

• ID
  rs31186342
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78502014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA CTATTTACGC TTTCGGTCTC
  W
  GGAATCCCAA GGCAGAAACA AAGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45526584	mCV23542540	ABI	CRAMUS_MOUSE	f	SNP	T	T					T		A
ss47026143	NES10759762	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A	T	T		T	A	T	T		T	T	T	A		A
ss135359208	ENSMUSSNP3373740	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							A
ss320807539	CHEV_3_78398629	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31186342					SNP	T	T	A	A	T	T	T	T	A	T	T	A	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026143	NES10759762	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78502014 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	within coordinates
Rr578424	regulatory region 578424	229 bp proximal
Tssr33603	transcription start site region 33603	342 bp upstream
Tssr33604	transcription start site region 33604	288 bp upstream
Tssr33605	transcription start site region 33605	273 bp upstream
Tssr33606	transcription start site region 33606	258 bp upstream
Tssr33607	transcription start site region 33607	185 bp upstream
Tssr33608	transcription start site region 33608	90 bp upstream