rs31186340 SNP Detail

Summary

• ID
  rs31186340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78502001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGAAACT TACTGCAGTA
  ATCCTAACAC ACTTGCAAAT CCCTGTCTTG AAATCGTGTG CAGGTCCTCC GTCAACAGCT
  GCGAGAAGTA GGAAGATTGA CTGCCATGTA AATTTAAAGC TGTAGACAAA TATTTCAATT
  TTATTAAGTA AAATACCTTT GGGCATCAGG GATCCTGTAG CCAATTAAAT ATACTATTTA
  Y
  GCTTTCGGTC TCTGGAATCC CAAGGCAGAA ACAAAGAAAG TGAGCACAGC TGTGTGCCAG
  TAGTTACATG GGCCTGTGCC CATTCTCAGA AGCCCCAGCG GGCCTGGGAA GCAGATGACC
  CCAGCAAAAG AACTCTTCAC ACAGCGGGTG CTGACTCTCC AGGTACCCCA CCCTGAGGAC
  AGCCAAATTT AATGTGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47026141	NES10759760	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31186340					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026141	NES10759760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78502001 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	within coordinates
Rr578424	regulatory region 578424	242 bp proximal
Tssr33603	transcription start site region 33603	329 bp upstream
Tssr33604	transcription start site region 33604	275 bp upstream
Tssr33605	transcription start site region 33605	260 bp upstream
Tssr33606	transcription start site region 33606	245 bp upstream
Tssr33607	transcription start site region 33607	172 bp upstream
Tssr33608	transcription start site region 33608	77 bp upstream