rs31186077 SNP Detail

Summary

• ID
  rs31186077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146080630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTGAGGTG CCCACAGCGC CATGATGAGG GCTGTCTCTC
  TGTTTCTCTT GGATTTCCAA AGTGCCCCAT CTCCAGAAGG AGCTCATTTG GGTATATCTG
  Y
  TCATATTTCA TTTGAAAATA GCATTGACCC ATCAGCTGGT CTGTCAATAA CAAAATTACT
  GCTGGCATTG GGGAGTAAAA GAACCACCCA GCACCTCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45507212	mCV23541914	ABI	CRAMUS_MOUSE	f	SNP		T	T			C
ss47026898	NES10844344	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T		T	C	C		C	C		T
ss136043574	ENSMUSSNP6986159	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss321010076	CHEV_3_146037839	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31186077					SNP	T	T	T	T	T	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026898	NES10844344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146080630 () rs orientation: forward

Symbol	Name	Function Class
Gm10636	predicted gene 10636	within coordinates
Rr587014	regulatory region 587014	265 bp proximal
Rr587015	regulatory region 587015	1077 bp proximal
Rr587016	regulatory region 587016	1139 bp proximal