rs31185694 SNP Detail

Summary

• ID
  rs31185694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121922443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACTGATG TGGGGGGCAA GGGCAGCCAG CAGAGTCTCC
  TGTGTCATCC TGAGTAGTTG ATTTTATTCT TTGCTGTTGT CTTTCCTCAC ATGGAAAATG
  R
  AGTGGGTGAC GCTGGCTTCT GCTTCATAGG AGGGATGTAG TGGAGACAAA TGAGATGGAG
  CGTTGTGAAT GTTTCCCCGG GCTCCTTGAG AACAGGTAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45507107	mCV22324433	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss135735487	ENSMUSSNP4164560	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320908653	CHEV_3_121831712	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31185694					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121922443 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Gm40138	predicted gene, 40138			within coordinates
Gm43158	predicted gene 43158			within coordinates
Rr584240	regulatory region 584240			1874 bp proximal