rs31185561 SNP Detail

Summary

• ID
  rs31185561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78501676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGATACT TACCTAGCAT
  GCATGGGACT CACGGTTTCA TCTTCAGTGC CAGTTTTCTA AAAAGTAGAA TTCCTCCTGA
  CAGTTACAGA ACTGTATTTT TTTTTTAATT AAAGAAGAGA AAATATAAGG AAAAGTTATC
  GCAGCCAAAT GATGACTCTT ATCCTCCACA TGCTGCTGCG GACTTCCTGC GTTACGTGGA
  R
  TTTATATAAC ACGAAAGTGG GAATTGTGCA GCGTTCTAAA AATACATAAC CCAGGACACT
  GACTCTGCCT TAAGTGTTCA GTATGGGCAG GCTCAGATCT GGCAGAGCCT TGGGACCACT
  GCTCATCAGA AACTTACTGC AGTAATCCTA ACACACTTGC AAATCCCTGT CTTGAAATCG
  TGTGCAGGTC CTCCGTCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47026131	NES10759747	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31185561					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026131	NES10759747	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78501676 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	148 bp proximal
Rr578424	regulatory region 578424	567 bp proximal
Tssr33603	transcription start site region 33603	4 bp upstream
Tssr33604	transcription start site region 33604	40 bp downstream
Tssr33605	transcription start site region 33605	53 bp downstream
Tssr33606	transcription start site region 33606	68 bp downstream
Tssr33607	transcription start site region 33607	144 bp downstream
Tssr33608	transcription start site region 33608	202 bp downstream