rs31185559 SNP Detail

Summary

• ID
  rs31185559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78501646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAATAT ATACGGTTAT
  GTAGCTTAGT CATAGATACT TACCTAGCAT GCATGGGACT CACGGTTTCA TCTTCAGTGC
  CAGTTTTCTA AAAAGTAGAA TTCCTCCTGA CAGTTACAGA ACTGTATTTT TTTTTTAATT
  AAAGAAGAGA AAATATAAGG AAAAGTTATC GCAGCCAAAT GATGACTCTT ATCCTCCACA
  Y
  GCTGCTGCGG ACTTCCTGCG TTACGTGGAA TTTATATAAC ACGAAAGTGG GAATTGTGCA
  GCGTTCTAAA AATACATAAC CCAGGACACT GACTCTGCCT TAAGTGTTCA GTATGGGCAG
  GCTCAGATCT GGCAGAGCCT TGGGACCACT GCTCATCAGA AACTTACTGC AGTAATCCTA
  ACACACTTGC AAATCCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47026129	NES10759744	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31185559					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026129	NES10759744	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78501646 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	178 bp proximal
Rr578424	regulatory region 578424	597 bp proximal
Tssr33603	transcription start site region 33603	within coordinates
Tssr33604	transcription start site region 33604	70 bp downstream
Tssr33605	transcription start site region 33605	83 bp downstream
Tssr33606	transcription start site region 33606	98 bp downstream
Tssr33607	transcription start site region 33607	174 bp downstream
Tssr33608	transcription start site region 33608	232 bp downstream