rs31185557 SNP Detail

Summary

• ID
  rs31185557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78501645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCCTCCTG ACAGTTACAG AACTGTATTT TTTTTTTAAT
  TAAAGAAGAG AAAATATAAG GAAAAGTTAT CGCAGCCAAA TGATGACTCT TATCCTCCAC
  R
  TGCTGCTGCG GACTTCCTGC GTTACGTGGA ATTTATATAA CACGAAAGTG GGAATTGTGC
  AGCGTTCTAA AAATACATAA CCCAGGACAC TGACTCTGCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47026127	NES10759741	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31185557					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026127	NES10759741	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78501645 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	179 bp proximal
Rr578424	regulatory region 578424	598 bp proximal
Tssr33603	transcription start site region 33603	1 bp downstream
Tssr33604	transcription start site region 33604	71 bp downstream
Tssr33605	transcription start site region 33605	84 bp downstream
Tssr33606	transcription start site region 33606	99 bp downstream
Tssr33607	transcription start site region 33607	175 bp downstream
Tssr33608	transcription start site region 33608	233 bp downstream