rs31183952 SNP Detail

Summary

• ID
  rs31183952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116532143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCA GAAAACCAGA AGGAAAGAGA
  R
  AACTGCCTAC ACGCGAGTCA GTGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45506793	mCV24029362	ABI	CRAMUS_MOUSE	f	SNP	G	G		A	G
ss60436374	NES15938072	PERLEGEN	MM_PANEL2	f	SNP			G			G		G	G	G		A
ss135671473	ENSMUSSNP6439320	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			G
ss320896025	CHEV_3_116441412	CHEVERUD	SCREENING_POP	f	SNP							G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31183952					SNP	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436374	NES15938072	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116532143 () rs orientation: forward

Symbol	Name	Function Class
Agl	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	1505 bp downstream
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583772	regulatory region 583772	1090 bp distal
Rr583773	regulatory region 583773	736 bp distal
Rr583774	regulatory region 583774	988 bp distal