GGAGATAAAG CATGCCCATA TACAAAAGTA AACAGTGGGC CACCAAACTA GAAACTAATT AGAAAGTGAC TGGTCCATCT GACTCACTGC CTGGGGCATG GATGGCTCCA AGCTGCTGAA AAGAATGTGT TCCCACTTTG CACTTAATTA CAGTTGTCAC GTTTGTGTAT TGTCATCCTC AAAGCCCTTC CCAAACACTC Y GTCTCTCTGA AACCTGCAAA TTATCCAGAA TTATGCACAT GCATATATAT GTGTGCATAA TGTTTATTTT TGCTGACTAT CACTGGCTTT GAAAGAGTAT CAATTTCCAC AGATAAGGAA GTCATCCTAG GAGGTCACAA GCAGGTTTTC AGTGCATAGT GGAAATTCTT GAAGGGTGTC ATTTGACAGA GGAAAGGTGC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss48024623 | NES11911948 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | C | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs31183150 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss48024623 | NES11911948 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr6:96091429 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
2900060L22Rik | RIKEN cDNA 2900060L22 gene | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr635053 | regulatory region 635053 | 1662 bp proximal | ||||||
Rr635054 | regulatory region 635054 | 1922 bp proximal | ||||||
Tafa1 | TAFA chemokine like family member 1 | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Tssr57824 | transcription start site region 57824 | 1331 bp downstream | ||||||
Tssr57825 | transcription start site region 57825 | 1321 bp downstream | ||||||
Tssr57826 | transcription start site region 57826 | 1278 bp downstream | ||||||
Tssr57827 | transcription start site region 57827 | 996 bp downstream | ||||||
Tssr57828 | transcription start site region 57828 | 801 bp upstream | ||||||
Tssr62190 | transcription start site region 62190 | 1466 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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