rs31180554 SNP Detail

Summary

• ID
  rs31180554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:96095142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCTGCA ACCTGTATCT
  TAGGGATGTT GATTGAGTCA AATTTTACAG TTCAAACTGC TAAATAAATC TATTTGGCCA
  GGACAATAGC TTGTTGCTTT TGTTATTTTC CAACCATGAG ACACATGACT AAGATATGCC
  AGCGATTACA ACCTGTCTTT ATGCTGTGCA TGTAGTCATT AACCAAAACC AAAAAGATGT
  Y
  GTATAGTTTG TAGTGGACTC TCACATAGTG TGTGTCTATG TGCTTATGGG AGCTGGAGCT
  ATTACGTGGA ACAGACATTC ATATCATCTT AGGTCTTATT AAAATACCAT GATTTTTAAA
  ATTGAAAAAC AGATACAAGA TTCTGACTGA AATTAAACTC ATTACTCATG TTTCCCCTTA
  TCTACCATAG AATTTGCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48024687	NES11911698	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31180554					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48024687	NES11911698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:96095142 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2900060L22Rik	RIKEN cDNA 2900060L22 gene			Noncoding-Transcript-Variant
Rr635053	regulatory region 635053			1207 bp distal
Rr635054	regulatory region 635054			1770 bp distal
Rr635055	regulatory region 635055			1448 bp distal
Rr635056	regulatory region 635056			709 bp distal
Rr635057	regulatory region 635057			1021 bp distal
Tafa1	TAFA chemokine like family member 1			Intron
				Noncoding-Transcript-Variant
Tssr62191	transcription start site region 62191			1157 bp upstream